Image processing and recognition for biological images
Identifieur interne : 000168 ( Main/Exploration ); précédent : 000167; suivant : 000169Image processing and recognition for biological images
Auteurs : Seiichi UchidaSource :
- Development, Growth & Differentiation [ 0012-1592 ] ; 2013.
Abstract
This paper reviews image processing and pattern recognition techniques, which will be useful to analyze bioimages. Although this paper does not provide their technical details, it will be possible to grasp their main tasks and typical tools to handle the tasks. Image processing is a large research area to improve the visibility of an input image and acquire some valuable information from it. As the main tasks of image processing, this paper introduces gray-level transformation, binarization, image filtering, image segmentation, visual object tracking, optical flow and image registration. Image pattern recognition is the technique to classify an input image into one of the predefined classes and also has a large research area. This paper overviews its two main modules, that is, feature extraction module and classification module. Throughout the paper, it will be emphasized that bioimage is a very difficult target for even state-of-the-art image processing and pattern recognition techniques due to noises, deformations, etc. This paper is expected to be one tutorial guide to bridge biology and image processing researchers for their further collaboration to tackle such a difficult target.
Url:
DOI: 10.1111/dgd.12054
PubMed: 23560739
PubMed Central: 3746120
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 000212
- to stream Pmc, to step Curation: 000212
- to stream Pmc, to step Checkpoint: 000076
- to stream Ncbi, to step Merge: 000158
- to stream Ncbi, to step Curation: 000158
- to stream Ncbi, to step Checkpoint: 000158
- to stream Main, to step Merge: 000171
- to stream Main, to step Curation: 000168
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Image processing and recognition for biological images</title>
<author><name sortKey="Uchida, Seiichi" sort="Uchida, Seiichi" uniqKey="Uchida S" first="Seiichi" last="Uchida">Seiichi Uchida</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PMC</idno>
<idno type="pmid">23560739</idno>
<idno type="pmc">3746120</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3746120</idno>
<idno type="RBID">PMC:3746120</idno>
<idno type="doi">10.1111/dgd.12054</idno>
<date when="2013">2013</date>
<idno type="wicri:Area/Pmc/Corpus">000212</idno>
<idno type="wicri:Area/Pmc/Curation">000212</idno>
<idno type="wicri:Area/Pmc/Checkpoint">000076</idno>
<idno type="wicri:Area/Ncbi/Merge">000158</idno>
<idno type="wicri:Area/Ncbi/Curation">000158</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">000158</idno>
<idno type="wicri:doubleKey">0012-1592:2013:Uchida S:image:processing:and</idno>
<idno type="wicri:Area/Main/Merge">000171</idno>
<idno type="wicri:Area/Main/Curation">000168</idno>
<idno type="wicri:Area/Main/Exploration">000168</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Image processing and recognition for biological images</title>
<author><name sortKey="Uchida, Seiichi" sort="Uchida, Seiichi" uniqKey="Uchida S" first="Seiichi" last="Uchida">Seiichi Uchida</name>
</author>
</analytic>
<series><title level="j">Development, Growth & Differentiation</title>
<idno type="ISSN">0012-1592</idno>
<idno type="eISSN">1440-169X</idno>
<imprint><date when="2013">2013</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><p>This paper reviews image processing and pattern recognition techniques, which will be useful to analyze bioimages. Although this paper does not provide their technical details, it will be possible to grasp their main tasks and typical tools to handle the tasks. Image processing is a large research area to improve the visibility of an input image and acquire some valuable information from it. As the main tasks of image processing, this paper introduces gray-level transformation, binarization, image filtering, image segmentation, visual object tracking, optical flow and image registration. Image pattern recognition is the technique to classify an input image into one of the predefined classes and also has a large research area. This paper overviews its two main modules, that is, feature extraction module and classification module. Throughout the paper, it will be emphasized that bioimage is a very difficult target for even state-of-the-art image processing and pattern recognition techniques due to noises, deformations, etc. This paper is expected to be one tutorial guide to bridge biology and image processing researchers for their further collaboration to tackle such a difficult target.</p>
</div>
</front>
<back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Avidan, S" uniqKey="Avidan S">S Avidan</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Ballard, D" uniqKey="Ballard D">D Ballard</name>
</author>
<author><name sortKey="Brown, C" uniqKey="Brown C">C Brown</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Bay, H" uniqKey="Bay H">H Bay</name>
</author>
<author><name sortKey="Ess, A" uniqKey="Ess A">A Ess</name>
</author>
<author><name sortKey="Tuytelaars, T" uniqKey="Tuytelaars T">T Tuytelaars</name>
</author>
<author><name sortKey="Gool, Lv" uniqKey="Gool L">LV Gool</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Beauchemin, Ss" uniqKey="Beauchemin S">SS Beauchemin</name>
</author>
<author><name sortKey="Barron, Jl" uniqKey="Barron J">JL Barron</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Berclaz, J" uniqKey="Berclaz J">J Berclaz</name>
</author>
<author><name sortKey="Fleuret, F" uniqKey="Fleuret F">F Fleuret</name>
</author>
<author><name sortKey="Turetken, E" uniqKey="Turetken E">E Turetken</name>
</author>
<author><name sortKey="Fua, P" uniqKey="Fua P">P Fua</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Bise, R" uniqKey="Bise R">R Bise</name>
</author>
<author><name sortKey="Yin, Z" uniqKey="Yin Z">Z Yin</name>
</author>
<author><name sortKey="Kanade, T" uniqKey="Kanade T">T Kanade</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Bishop, Cm" uniqKey="Bishop C">CM Bishop</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Coelho, Lp" uniqKey="Coelho L">LP Coelho</name>
</author>
<author><name sortKey="Shariff, A" uniqKey="Shariff A">A Shariff</name>
</author>
<author><name sortKey="Murphy, Rf" uniqKey="Murphy R">RF Murphy</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Danuser, G" uniqKey="Danuser G">G Danuser</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Duda, Ro" uniqKey="Duda R">RO Duda</name>
</author>
<author><name sortKey="Hart, Pe" uniqKey="Hart P">PE Hart</name>
</author>
<author><name sortKey="Stork, Dg" uniqKey="Stork D">DG Stork</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Fischler, Ma" uniqKey="Fischler M">MA Fischler</name>
</author>
<author><name sortKey="Bolles, Rc" uniqKey="Bolles R">RC Bolles</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Glasbey, Ca" uniqKey="Glasbey C">CA Glasbey</name>
</author>
<author><name sortKey="Mardia, Kv" uniqKey="Mardia K">KV Mardia</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Wolberg, G" uniqKey="Wolberg G">G Wolberg</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Gonzales, Rc" uniqKey="Gonzales R">RC Gonzales</name>
</author>
<author><name sortKey="Woods, Re" uniqKey="Woods R">RE Woods</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Horn, B" uniqKey="Horn B">B Horn</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Jain, Ak" uniqKey="Jain A">AK Jain</name>
</author>
<author><name sortKey="Duin, Rpw" uniqKey="Duin R">RPW Duin</name>
</author>
<author><name sortKey="Mao, J" uniqKey="Mao J">J Mao</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Jain, Ak" uniqKey="Jain A">AK Jain</name>
</author>
<author><name sortKey="Murty, Mn" uniqKey="Murty M">MN Murty</name>
</author>
<author><name sortKey="Flynn, Pj" uniqKey="Flynn P">PJ Flynn</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Jain, Ak" uniqKey="Jain A">AK Jain</name>
</author>
<author><name sortKey="Zhong, Y" uniqKey="Zhong Y">Y Zhong</name>
</author>
<author><name sortKey="Dubuisson Jolly, M P" uniqKey="Dubuisson Jolly M">M-P Dubuisson-Jolly</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Jaqaman, K" uniqKey="Jaqaman K">K Jaqaman</name>
</author>
<author><name sortKey="Loerke, D" uniqKey="Loerke D">D Loerke</name>
</author>
<author><name sortKey="Mettlen, M" uniqKey="Mettlen M">M Mettlen</name>
</author>
<author><name sortKey="Kuwata, H" uniqKey="Kuwata H">H Kuwata</name>
</author>
<author><name sortKey="Grinstein, S" uniqKey="Grinstein S">S Grinstein</name>
</author>
<author><name sortKey="Schmid, Sl" uniqKey="Schmid S">SL Schmid</name>
</author>
<author><name sortKey="Danuser, G" uniqKey="Danuser G">G Danuser</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kanade, T" uniqKey="Kanade T">T Kanade</name>
</author>
<author><name sortKey="Yin, Z" uniqKey="Yin Z">Z Yin</name>
</author>
<author><name sortKey="Bise, R" uniqKey="Bise R">R Bise</name>
</author>
<author><name sortKey="Huh, S" uniqKey="Huh S">S Huh</name>
</author>
<author><name sortKey="Eom, S" uniqKey="Eom S">S Eom</name>
</author>
<author><name sortKey="Sandbothe, M" uniqKey="Sandbothe M">M Sandbothe</name>
</author>
<author><name sortKey="Chen, M" uniqKey="Chen M">M Chen</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kass, M" uniqKey="Kass M">M Kass</name>
</author>
<author><name sortKey="Witkin, A" uniqKey="Witkin A">A Witkin</name>
</author>
<author><name sortKey="Terzopoulos, D" uniqKey="Terzopoulos D">D Terzopoulos</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Mcinerney, T" uniqKey="Mcinerney T">T McInerney</name>
</author>
<author><name sortKey="Terzopoulos, D" uniqKey="Terzopoulos D">D Terzopoulos</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Mikolajczyk, K" uniqKey="Mikolajczyk K">K Mikolajczyk</name>
</author>
<author><name sortKey="Schmid, C" uniqKey="Schmid C">C Schmid</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Milanfar, P" uniqKey="Milanfar P">P Milanfar</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Parthenis, K" uniqKey="Parthenis K">K Parthenis</name>
</author>
<author><name sortKey="Metaxaki Kossionides, C" uniqKey="Metaxaki Kossionides C">C Metaxaki-Kossionides</name>
</author>
<author><name sortKey="Dimitriadi, B" uniqKey="Dimitriadi B">B Dimitriadi</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Peng, H" uniqKey="Peng H">H Peng</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Redert, A" uniqKey="Redert A">A Redert</name>
</author>
<author><name sortKey="Hendriks, E" uniqKey="Hendriks E">E Hendriks</name>
</author>
<author><name sortKey="Biemond, J" uniqKey="Biemond J">J Biemond</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Schneider, Ca" uniqKey="Schneider C">CA Schneider</name>
</author>
<author><name sortKey="Rasband, Ws" uniqKey="Rasband W">WS Rasband</name>
</author>
<author><name sortKey="Eliceiri, Kw" uniqKey="Eliceiri K">KW Eliceiri</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Shamir, L" uniqKey="Shamir L">L Shamir</name>
</author>
<author><name sortKey="Delaney, Jd" uniqKey="Delaney J">JD Delaney</name>
</author>
<author><name sortKey="Orlov, N" uniqKey="Orlov N">N Orlov</name>
</author>
<author><name sortKey="Eckley, Dd" uniqKey="Eckley D">DD Eckley</name>
</author>
<author><name sortKey="Goldberg, Ig" uniqKey="Goldberg I">IG Goldberg</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Smal, I" uniqKey="Smal I">I Smal</name>
</author>
<author><name sortKey="Draegestein, K" uniqKey="Draegestein K">K Draegestein</name>
</author>
<author><name sortKey="Galjart, N" uniqKey="Galjart N">N Galjart</name>
</author>
<author><name sortKey="Niessen, W" uniqKey="Niessen W">W Niessen</name>
</author>
<author><name sortKey="Meijering, E" uniqKey="Meijering E">E Meijering</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Swedlow, Jr" uniqKey="Swedlow J">JR Swedlow</name>
</author>
<author><name sortKey="Goldberg, Ig" uniqKey="Goldberg I">IG Goldberg</name>
</author>
<author><name sortKey="Eliceiri, Kw" uniqKey="Eliceiri K">KW Eliceiri</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Szeliski, R" uniqKey="Szeliski R">R Szeliski</name>
</author>
<author><name sortKey="Zabih, R" uniqKey="Zabih R">R Zabih</name>
</author>
<author><name sortKey="Scharstein, D" uniqKey="Scharstein D">D Scharstein</name>
</author>
<author><name sortKey="Veksler, O" uniqKey="Veksler O">O Veksler</name>
</author>
<author><name sortKey="Kolmogorov, V" uniqKey="Kolmogorov V">V Kolmogorov</name>
</author>
<author><name sortKey="Agarwala, A" uniqKey="Agarwala A">A Agarwala</name>
</author>
<author><name sortKey="Tappen, M" uniqKey="Tappen M">M Tappen</name>
</author>
<author><name sortKey="Rother, C" uniqKey="Rother C">C Rother</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Torralba, A" uniqKey="Torralba A">A Torralba</name>
</author>
<author><name sortKey="Fergus, R" uniqKey="Fergus R">R Fergus</name>
</author>
<author><name sortKey="Freeman, Wt" uniqKey="Freeman W">WT Freeman</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Trier, D" uniqKey="Trier ">ØD Trier</name>
</author>
<author><name sortKey="Jain, Ak" uniqKey="Jain A">AK Jain</name>
</author>
<author><name sortKey="Taxt, T" uniqKey="Taxt T">T Taxt</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Uchida, S" uniqKey="Uchida S">S Uchida</name>
</author>
<author><name sortKey="Sakoe, H" uniqKey="Sakoe H">H Sakoe</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Yang, F" uniqKey="Yang F">F Yang</name>
</author>
<author><name sortKey="Mackey, Ma" uniqKey="Mackey M">MA Mackey</name>
</author>
<author><name sortKey="Ianzini, F" uniqKey="Ianzini F">F Ianzini</name>
</author>
<author><name sortKey="Gallardo, G" uniqKey="Gallardo G">G Gallardo</name>
</author>
<author><name sortKey="Sonka, M" uniqKey="Sonka M">M Sonka</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Yilmaz, A" uniqKey="Yilmaz A">A Yilmaz</name>
</author>
<author><name sortKey="Javed, O" uniqKey="Javed O">O Javed</name>
</author>
<author><name sortKey="Shah, M" uniqKey="Shah M">M Shah</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Zitova, B" uniqKey="Zitova B">B Zitová</name>
</author>
<author><name sortKey="Flusser, J" uniqKey="Flusser J">J Flusser</name>
</author>
</analytic>
</biblStruct>
</listBibl>
</div1>
</back>
</TEI>
<affiliations><list></list>
<tree><noCountry><name sortKey="Uchida, Seiichi" sort="Uchida, Seiichi" uniqKey="Uchida S" first="Seiichi" last="Uchida">Seiichi Uchida</name>
</noCountry>
</tree>
</affiliations>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Ticri/CIDE/explor/OcrV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000168 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000168 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Ticri/CIDE |area= OcrV1 |flux= Main |étape= Exploration |type= RBID |clé= PMC:3746120 |texte= Image processing and recognition for biological images }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:23560739" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \ | NlmPubMed2Wicri -a OcrV1
This area was generated with Dilib version V0.6.32. |